Where do I start?

The number of files and choices you need to make to run Breathe Easy may feel overwhelming at first. However, if you follow the step-by-step instructions provided below, you will slowly become comfortable and familiar with the process of running your data. While learning to use the software is involved, it is because we aim to offer the utmost flexibility so that Breathe Easy can be applied to any dataset you can throw at it.

• 1. Initialize: Input and Output for SASSI
  • 1.1. Select Input files and and Output folder
• 2. Optional Data Validation
  • 2.1. Timestamp Review
• 3. Metadata Generation
  • 3.1. Manual Entry
  • 3.2. Automated Pull of Data using LIMS System
• 4. Metadata Configuration subGUI
• 5. Basic Settings subGUI
• 6. Automated Settings subGUI
  • 6.1. Default Settings
  • 6.2. Existing Settings Files
  • 6.3. Derive Settings from Signal Files
• 7. Manual Settings Configuration
  • 7.1. New Settings File
  • 7.2. Existing Manual Settings Files
• 8. Running SASSI
  • 8.1. Parallel Processing
• 9. STAGG Settings subGUI
  • 9.1. Primary Model Configuration - REQUIRED
  • 9.2. Additional Plots Configuration - OPTIONAL
• 10. Initialize: Input for STAGG
• 11. Running STAGG
• 12. Full Run of SASSI-STAGG