Breathe Easy

Breathe Easy is a Python and R based software suite that can interrogate respiratory waveforms from whole-body plethysmography recordings in an automated fashion according to quantitative user settings. The program further analyzes the data using a linear mixed effects model (LMEM) with Tukey post-hoc to test for significant differences. Publication-worthy graphs are then generated with signficiance marks based on these tests automatically added for the user.

Note

This project is under active development.

• Installation
  • Packaged Program Install
  • Source Install
• Launching Breathe Easy
  • From packaged version
  • From source
• Prepping Data
  • LabChart Signal File Export
  • LabChart DataPad Export
• Quickstart
• Where do I start?
  • 1. Initialize: Input and Output for SASSI
  • 2. Optional Data Validation
  • 3. Metadata Generation
  • 4. Metadata Configuration subGUI
  • 5. Basic Settings subGUI
  • 6. Automated Settings subGUI
  • 7. Manual Settings Configuration
  • 8. Running SASSI
  • 9. STAGG Settings subGUI
  • 10. Initialize: Input for STAGG
  • 11. Running STAGG
  • 12. Full Run of SASSI-STAGG
• Vignette (Example Data)
  • Ex. LabChart Exporting
  • Ex. Automated Run
  • Ex. Manual Run
• Understanding the Output
  • SASSI Output
  • STAGG Output
• Resources
  • Troubleshooting
  • Basic Statistics
  • Advanced statistics