Where do I start?
===================
The number of files and choices you need to make to run Breathe Easy may feel overwhelming at first. However,
if you follow the step-by-step instructions provided below, you will slowly become comfortable and familiar with the 
process of running your data. While learning to use the software is involved, it is because we aim to offer the utmost
flexibility so that Breathe Easy can be applied to any dataset you can throw at it.

.. toctree::
   :maxdepth: 2
   :numbered:

   BASSPRO Settings Configuration
   Metadata Configuration
   Basic Settings
   Autosettings
   ManualSettings
   BASSPRO
   STAGGsettings
   STAGGdata
   RunSTAGG
   FullRun